PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G131400.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 400aa    MW: 43850.3 Da    PI: 8.1009
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G131400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.4e-16224270455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Prupe.7G131400.3.p 224 VHNMSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 270
                         6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.26E-20217281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-20217280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.873220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.11E-16223274No hitNo description
PfamPF000101.0E-13224270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-18226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MQTSPLCHTP RRNKSSNSKL KAKANTPTLS LSLSLSFSLS HIPKTSKQHQ NQKQRRKRNQ  60
RVMGDTYDHY YKNATCSSSP SASVSPAAAA APSQPPSTSD EISLFLQQIL LRSSSSLASV  120
VAHTGKAPQF LFSSSPSVAA LPDHLSRPCH SMFLGDGITA VDSSAALLPA GNPNVSSSSF  180
GASENETDEY DCESEEGLEA LVEEAAGKPG CGRSSSKRSR AAEVHNMSEK RRRSRINEKM  240
KALQNLIPNS NKTDKASMLD EAIEYLKQLQ LQVQMLSMRN GMSLHPMCLP GALQPVQVSQ  300
MRMDLGEENR PLHLDMTGTL LMNQESPTQN LFHFSNQCTD ANQSYVPDMS NVVNSETSFG  360
LESSMRAHLG PFQLPNSSEN LNWERPLEFH FPLTHKYLI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.11520.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1812700.0GU181270.1 Prunus persica ALCATRAZ/SPATULA-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241481.10.0PREDICTED: transcription factor SPATULA isoform X3
TrEMBLD6N0W30.0D6N0W3_PRUPE; ALCATRAZ/SPATULA-like protein
TrEMBLM5VXD80.0M5VXD8_PRUPE; Uncharacterized protein (Fragment)
STRINGVIT_07s0031g00450.t011e-103(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.14e-50bHLH family protein